APBS Full Form
APBS stands for Adaptive Poisson-Boltzmann Solver. It is a software tool used to model and analyze biomolecular systems, especially proteins and DNA.
Key points about APBS:
APBS calculates the electrostatic properties of biomolecules through numerical solutions to the Poisson-Boltzmann equation. This equation models the interaction between biomolecules and water solvation.
It can calculate quantities like electrostatic potential, binding energy, solvation energy, etc. These provide insights into molecular structure, function and interactions.
APBS has applications in computational biology and biophysics. It aids research in areas like protein engineering, drug design, DNA analysis and molecular dynamics.
It complements experimental techniques like X-ray crystallography and NMR spectroscopy for studying biomolecules. APBS provides information that experiments cannot easily measure.
APBS is written in Python and C++ programming languages. It is open source software developed by researchers at universities like Illinois Urbana-Champaign, Michigan State, etc.
Key features include handling of proteins, nucleic acids, solvents, ligand charges, multiple dielectric constants and boundary conditions. It is highly customizable.
APBS runs on Linux, Mac, Windows and Unix computing platforms. It can leverage high performance computing resources like clusters and grids.
In summary, APBS or Adaptive Poisson-Boltzmann Solver is a computational tool for understanding biomolecular structure and interactions through modeling of electrostatics. It provides insights complementary to laboratory techniques for biophysics research and drug discovery.
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